Comparative Genomics of Amphibian-like Ranaviruses, Nucleocytoplasmic Large DNA Viruses of Poikilotherms

Recent research on genome evolution of large DNA viruses has highlighted a number of incredibly dynamic processes that can facilitate rapid adaptation. The genomes of amphibian-like ranaviruses – double-stranded DNA viruses infecting amphibians, reptiles, and fish (family Iridoviridae) – were examined to assess variation in genome content and evolutionary processes. The viruses studied were closely related, but their genome content varied considerably, with 29 genes identified that were not present in all of the major clades. Twenty-one genes had evidence of recombination, while a virus isolated from a captive reptile appeared to be a mosaic of two divergent parents. Positive selection was also found to be acting on more than a quarter of Ranavirus genes and was found most frequently in the Spanish common midwife toad virus, which has had a severe impact on amphibian host communities. Efforts to resolve the root of this group by inclusion of an outgroup were inconclusive, but a set of core genes were identified, which recovered a well-supported species tree

Singing from the Grave: DNA from a 180 Year Old Type Specimen Confirms the Identity of Chrysoperla carnea (Stephens)

Copyright: © 2015 Price et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published version of the article

To deliver a sustainable built estate; the management and operationalisation of sustainable facilities management

This study determines the ability of FM to operationalise the management of sustainability through delivering a change in culture towards Sustainable Facilities Management (SFM). Delivering a sustainable built estate is an increasingly important aspect of society considering that it produces 45% of all UK Carbon emissions (Kelly, 2008). Through a combination of case study and observational research methods this study answers the query of where Facilities Management (FM) can fit in as part of the solution. A mixed methodological approach was taken using both qualitative and quantitative research methods. A grounded theory was followed with the research findings developed through multiple stages. A content analysis conducted on 65 FM organisations established the current position of the industry towards SFM. Interviews were conducted with 10 FM professional to create an understanding of sustainability in the FM context. However, the main focus of the case study was a two year ethnographic study to test the response of an FM organisation to environmental policy. To test the result of this primary energy and waste data was used to analyse the impact of SFM operationally. Energy and waste were two sections of sustainability that were chosen to be used to further analysis due to the availability of measureable data. Finally, the impact of physical facilities upon the environmental behaviour of building occupants was tested through a questionnaire regarding recycling facilities; 500 questionnaires were issued, with a response rate of 38%. The research shows that FM is in a key position to participate in delivering environmental policy for the built environment. SFM can be operationalised to deliver a consistent, methodological approach that has sustainability as a core element. This shows that the model of FM is changing. Facility design and provision does impact on occupant behaviour, physical facilities should be considered as a factor implementing environmental behaviour

Anthropogenic and ecological drivers of amphibian disease (ranavirosis)

This is the final version. Available on open access from Public Library of Science via the DOI in this recordData Availability: The data analysed in this manuscript has been deposited in Dryad (doi:http://dx.doi.org/10.5061/dryad.66k59). Third party data was obtained from Froglife and are therefore available through the charity Froglife (Registered Charity No. 1093372 in England and Wales). Please submit queries for data to [email protected] and asking for access to the data for research purposes. Further contact details can also be found on their website http://www.froglife.org/contact-us/.Ranaviruses are causing mass amphibian die-offs in North America, Europe and Asia, and have been implicated in the decline of common frog (Rana temporaria) populations in the UK. Despite this, we have very little understanding of the environmental drivers of disease occurrence and prevalence. Using a long term (1992-2000) dataset of public reports of amphibian mortalities, we assess a set of potential predictors of the occurrence and prevalence of Ranavirus-consistent common frog mortality events in Britain. We reveal the influence of biotic and abiotic drivers of this disease, with many of these abiotic characteristics being anthropogenic. Whilst controlling for the geographic distribution of mortality events, disease prevalence increases with increasing frog population density, presence of fish and wild newts, increasing pond depth and the use of garden chemicals. The presence of an alternative host reduces prevalence, potentially indicating a dilution effect. Ranavirosis occurrence is associated with the presence of toads, an urban setting and the use of fish care products, providing insight into the causes of emergence of disease. Links between occurrence, prevalence, pond characteristics and garden management practices provides useful management implications for reducing the impacts of Ranavirus in the wild

Availability of cancer decision-support tools: A cross-sectional survey of UK primary care

This is the author accepted manuscript. The final version is available from Royal College of General Practitioners via the DOI in this record.Background Decision-support tools quantify the risk of undiagnosed cancer in symptomatic patients, and may help general practitioners (GPs) when making referrals. Aims: To quantify the availability and use of cancer decision-support tools (QCancer® and Risk Assessment Tools). To explore the association between tool availability and two-week-wait referrals for suspected cancer. Design and setting: Cross-sectional postal survey in UK primary care. Methods: 4,600 GPs from a random sample of 975 UK general practices were invited to participate. Outcome measures included the proportions of UK general practices where: (1) cancer decision-support tools are available, and (2) at least one GP uses the tool. Weighted least-squares linear regression with robust errors tested the association between tool availability and number of two-week-wait referrals, adjusting for practice size, sex, age and index of multiple deprivation. Results: 476 GPs in 227 practices responded (response rates: practitioner, 10.3%; practice, 23.3%). Cancer decision-support tools were available in 83/227 (36.6%, 95% confidence interval 30.3% to 43.1%) practices. Tools were available and likely to be used in 38/227 (16.7%, 12.1% to 22.2%) practices. In sub-group analyses of 172 English practices, there was no difference in mean two-week-wait referral rate between practices with tools and those without (mean adjusted difference in referrals per 100,000: 3.1, -5.5 to +11.7). Conclusions: This is the first survey of cancer decision-support tool availability and use. It suggests that the tools are an underused resource in the UK. Given the cost of cancer investigation, a randomised controlled trial of such clinical decision-support aids would be appropriate.National Institute for Health Research (NIHR

Is omission of free text records a possible source of data loss and bias in Clinical Practice Research Datalink studies? A case-control study.

This is the final version of the article. Available from the publisher via the DOI in this record.OBJECTIVES: To estimate data loss and bias in studies of Clinical Practice Research Datalink (CPRD) data that restrict analyses to Read codes, omitting anything recorded as text. DESIGN: Matched case-control study. SETTING: Patients contributing data to the CPRD. PARTICIPANTS: 4915 bladder and 3635 pancreatic, cancer cases diagnosed between 1 January 2000 and 31 December 2009, matched on age, sex and general practitioner practice to up to 5 controls (bladder: n=21 718; pancreas: n=16 459). The analysis period was the year before cancer diagnosis. PRIMARY AND SECONDARY OUTCOME MEASURES: Frequency of haematuria, jaundice and abdominal pain, grouped by recording style: Read code or text-only (ie, hidden text). The association between recording style and case-control status (χ(2) test). For each feature, the odds ratio (OR; conditional logistic regression) and positive predictive value (PPV; Bayes' theorem) for cancer, before and after addition of hidden text records. RESULTS: Of the 20 958 total records of the features, 7951 (38%) were recorded in hidden text. Hidden text recording was more strongly associated with controls than with cases for haematuria (140/336=42% vs 556/3147=18%) in bladder cancer (χ(2) test, p<0.001), and for jaundice (21/31=67% vs 463/1565=30%, p<0.0001) and abdominal pain (323/1126=29% vs 397/1789=22%, p<0.001) in pancreatic cancer. Adding hidden text records corrected PPVs of haematuria for bladder cancer from 4.0% (95% CI 3.5% to 4.6%) to 2.9% (2.6% to 3.2%), and of jaundice for pancreatic cancer from 12.8% (7.3% to 21.6%) to 6.3% (4.5% to 8.7%). Adding hidden text records did not alter the PPV of abdominal pain for bladder (codes: 0.14%, 0.13% to 0.16% vs codes plus hidden text: 0.14%, 0.13% to 0.15%) or pancreatic (0.23%, 0.21% to 0.25% vs 0.21%, 0.20% to 0.22%) cancer. CONCLUSIONS: Omission of text records from CPRD studies introduces bias that inflates outcome measures for recognised alarm symptoms. This potentially reinforces clinicians' views of the known importance of these symptoms, marginalising the significance of 'low-risk but not no-risk' symptoms.SJP is funded by a University of Exeter PhD studentship. This report presents independent research part funded by the National Institute for Health Research Programme Grants for Applied Research programme (RP-PG-0608- 10045). The views expressed are those of the authors and not necessarily those of the National Health Service, the National Institute for Health Research, or the Department of Health

Dexamethasone induces apoptosis in pulmonary arterial smooth muscle cells

BACKGROUND: Dexamethasone suppressed inflammation and haemodynamic changes in an animal model of pulmonary arterial hypertension (PAH). A major target for dexamethasone actions is NF-κB, which is activated in pulmonary vascular cells and perivascular inflammatory cells in PAH. Reverse remodelling is an important concept in PAH disease therapy, and further to its anti-proliferative effects, we sought to explore whether dexamethasone augments pulmonary arterial smooth muscle cell (PASMC) apoptosis. METHODS: Analysis of apoptosis markers (caspase 3, in-situ DNA fragmentation) and NF-κB (p65 and phospho-IKK-α/β) activation was performed on lung tissue from rats with monocrotaline (MCT)-induced pulmonary hypertension (PH), before and after day 14–28 treatment with dexamethasone (5 mg/kg/day). PASMC were cultured from this rat PH model and from normal human lung following lung cancer surgery. Following stimulation with TNF-α (10 ng/ml), the effects of dexamethasone (10(−8)–10(−6) M) and IKK2 (NF-κB) inhibition (AS602868, 0–3 μM (0-3×10(−6) M) on IL-6 and CXCL8 release and apoptosis was determined by ELISA and by Hoechst staining. NF-κB activation was measured by TransAm assay. RESULTS: Dexamethasone treatment of rats with MCT-induced PH in vivo led to PASMC apoptosis as displayed by increased caspase 3 expression and DNA fragmentation. A similar effect was seen in vitro using TNF-α-simulated human and rat PASMC following both dexamethasone and IKK2 inhibition. Increased apoptosis was associated with a reduction in NF-κB activation and in IL-6 and CXCL8 release from PASMC. CONCLUSIONS: Dexamethasone exerted reverse-remodelling effects by augmenting apoptosis and reversing inflammation in PASMC possibly via inhibition of NF-κB. Future PAH therapies may involve targeting these important inflammatory pathways

3D ground-use optimisation for sustainable urban development planning: a case-study from Earls Court, London, UK

Cities provide opportunities for economic growth, cultural and social development and scientific and technological innovation. Yet they have often developed without coordination and integration of the mutual benefits that could be provided by using urban underground space (UUS), often to the detriment or exclusion of other potential city functions (Parriaux et al., 2004). Given that 60% of the area expected to be urbanised by 2030 has yet to be built (World Economic Forum, 2016) there is significant opportunity to influence future city planning and design using subsurface engineering geological ground models as a component part of a UUS management system. For future city development to be sustainable and resilient to change, an integrated approach that crosses disciplines and facilitates desirable urban futures while minimising the likelihood of undesirable ones is required (Lombardi et al., 2012; Price et al., 2016).University of Cambridge Future Cities Fellowshi

Comparison of the Spinels Co3O4 and NiCo2O4 as Bifunctional Oxygen Catalysts in Alkaline Media

Data from experiments with both rotating disc electrodes (RDEs) and gas diffusion electrodes (GDEs) are used to investigate the properties of the spinels, Co3O4 and NiCo2O4, as bifunctional oxygen electrocatalysts. Emphasis is placed on catalyst compositions and electrode structures free of carbon. Oxygen evolution and reduction occur at surfaces where the transition metals are in different oxidation states but the surface can be repeatedly cycled between these two states without significant change. It is shown that carbon-free, NiCo2O4 catalysed GDEs can be fabricated using structures based on stainless steel cloth or nickel foam. Those based on nickel foam can be cycled extensively and allow both O2 evolution and reduction at current densities up to 100 mA cm−2.European Commission (Theme 2010.7.3.1) Energy Storage Systems for Power Distribution NetworksMinistry of National Education, Republic of Turke

New insights into the relationship between draw solution chemistry and trace organic rejection by forward osmosis

© 2019 This study elucidates the impact of draw solution chemistry (in terms of pH and draw solute species) and membrane fouling on water flux and the rejection of trace organic contaminants by forward osmosis. The results show that draw solution chemistry could induce a notable impact on both water flux and TrOCs rejection. In addition, the impact was further influenced by membrane fouling. The reverse flux of proton (or hydroxyl) could alter the feed solution pH, which governed the separation of ionisable TrOCs. In addition, charged compounds generally exhibited higher rejections than neutral ones by the clean membrane. Electrostatic interaction, rather than size exclusion, was therefore the dominant rejection mechanism for most compounds. There was also a weak correlation between rejection and molecular sizes of the 43 TrOCs. Compared with Na+, Li+ with a larger hydrated radius showed a significantly lower reverse salt flux, resulting in a lower ionic strength and therefore a stronger electrostatic interaction. A fouling cake layer consisted of low molecular weight neutral organics could also affect TrOC rejection due to pore blockage and cake-enhanced concentration polarisation